![]() This will create a figure illustrating the last set of parameters viewed for that population in the Graph Window.Īdjustments to these figures can be accomplished by double-clicking on them to bring up the Graph Definition window, where a variety of different settings are available: To add figures to the layout simply open the Layout Editor, then drag and drop a population of interest from the Workspace directly into the Layout. The layout’s figures also enhance some of the analyses possible from the platform. Copy / Paste from the Geneset Inspector (CTRL or Command + c/v): Export option within the Genes tab:įigures can be exported from SeqGeq via the Layout Editor.There are a number of options for exporting Genesets from SeqGeq: To export these statistics for the workspace, click on the SeqGeq icon, and select the XLS option within the Export Workspace dialog there: Genesets Statistics can be generated within the SeqGeq workspace by selecting a population of interest and choosing “Add Statistics”: Try running the AutoGateCategorical plugin (see Chapter 8 – “Clustering” for guidance there) on the “SampleID” parameter do distinguish between samples there. Note: The 6K_PBMC.csv file is actually a concatenation of 5 samples of different sizes. This dialog also allows for the selection of parameters to include in the export, the format of the export, and the export location.Ĭombining sub-populations, or samples will result in the creation of a SampleID categorical parameter which distinguishes between samples combined by integer values corresponding to the order of samples combines. Within the resulting dialog users can select between exporting individual populations, or combining (aka “Concatenating”) subpopulations together. To export populations select the population nodes of interest, right clicking on one of those populations, and selecting “Export/Concatenate”: Nearly all of the information derived from SeqGeq can be exported for publication or further downstream analysis.
0 Comments
Leave a Reply. |
Details
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |